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NMR structure of fully methylated GATC site
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 0.5-1.0 mM 5'-D(*DGP*DCP*DGP*DAP*DGP*(6MA)P*DTP*DCP*DTP*DGP*DCP*DG)-3', 0.5-1.0 mM 5'-D(*DCP*DGP*DCP*DAP*DGP*(6MA)P*DTP*DCP*DTP*DCP*DGP*DC)-3' 100% D2O 6.8 287 2 2D 1H-1H COSY 0.5-1.0 mM 5'-D(*DGP*DCP*DGP*DAP*DGP*(6MA)P*DTP*DCP*DTP*DGP*DCP*DG)-3', 0.5-1.0 mM 5'-D(*DCP*DGP*DCP*DAP*DGP*(6MA)P*DTP*DCP*DTP*DCP*DGP*DC)-3' 100% D2O 6.8 287 3 2D 1H-1H TOCSY 0.5-1.0 mM 5'-D(*DGP*DCP*DGP*DAP*DGP*(6MA)P*DTP*DCP*DTP*DGP*DCP*DG)-3', 0.5-1.0 mM 5'-D(*DCP*DGP*DCP*DAP*DGP*(6MA)P*DTP*DCP*DTP*DCP*DGP*DC)-3' 100% D2O 6.8 287 4 2D 1H-13C HSQC 0.5-1.0 mM 5'-D(*DGP*DCP*DGP*DAP*DGP*(6MA)P*DTP*DCP*DTP*DGP*DCP*DG)-3', 0.5-1.0 mM 5'-D(*DCP*DGP*DCP*DAP*DGP*(6MA)P*DTP*DCP*DTP*DCP*DGP*DC)-3' 100% D2O 6.8 303 5 2D 1H-13C HSQC 0.5-1.0 mM 5'-D(*DGP*DCP*DGP*DAP*DGP*(6MA)P*DTP*DCP*DTP*DGP*DCP*DG)-3', 0.5-1.0 mM 5'-D(*DCP*DGP*DCP*DAP*DGP*(6MA)P*DTP*DCP*DTP*DCP*DGP*DC)-3' 100% D2O 6.8 303 6 2D 1H-1H NOESY 0.5-1.0 mM 5'-D(*DGP*DCP*DGP*DAP*DGP*(6MA)P*DTP*DCP*DTP*DGP*DCP*DG)-3', 0.5-1.0 mM 5'-D(*DCP*DGP*DCP*DAP*DGP*(6MA)P*DTP*DCP*DTP*DCP*DGP*DC)-3' 90% H2O/10% D2O 6.8 288 7 2D 1H-1H NOESY 0.5-1.0 mM 5'-D(*DGP*DCP*DGP*DAP*DGP*(6MA)P*DTP*DCP*DTP*DGP*DCP*DG)-3', 0.5-1.0 mM 5'-D(*DCP*DGP*DCP*DAP*DGP*(6MA)P*DTP*DCP*DTP*DCP*DGP*DC)-3' 90% H2O/10% D2O 6.8 308
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600 2 Varian INOVA 900
NMR Refinement Method Details Software simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 12 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 2 chemical shift assignment Sparky Goddard 3 peak picking Sparky Goddard 4 data analysis Felix Accelrys Software Inc. 5 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 6 processing NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 7 collection VnmrJ Varian 8 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore