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Solution NMR structure of human E2-like ubiquitin-fold modifier conjugating enzyme 1 (UFC1). Northeast Structural Genomics Consortium target HR41
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1.1 mM [U-100% 13C; U-100% 15N] protein UFC1 95% H2O/5% D2O na 6.5 ambient 298 2 SIMULTANEOUS HETERONUCLEAR RESOLVED [1H,1H]-NOESY 1.1 mM [U-100% 13C; U-100% 15N] protein UFC1 95% H2O/5% D2O na 6.5 ambient 298 3 GFT (4,3)D HNNCABCA 1.1 mM [U-100% 13C; U-100% 15N] protein UFC1 95% H2O/5% D2O na 6.5 ambient 298 4 GFT (4,3)D CABCA(CO)NHN 1.1 mM [U-100% 13C; U-100% 15N] protein UFC1 95% H2O/5% D2O na 6.5 ambient 298 5 GFT (4,3)D HABCAB(CO)NHN 1.1 mM [U-100% 13C; U-100% 15N] protein UFC1 95% H2O/5% D2O na 6.5 ambient 298 6 GFT (4,3) HCCH 1.1 mM [U-100% 13C; U-100% 15N] protein UFC1 95% H2O/5% D2O na 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 750 2 Varian INOVA 600
NMR Refinement Method Details Software molecular dynamics, simulated annealing, distance geometry, torsion angle dynamics CNS
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS 1.1 Brunger, Adams, Clore, Gros, Nilges and Read 2 refinement CYANA 2.1 Guntert, Mumenthaler and Wuthrich 3 structure solution CYANA 2.1 Guntert, Mumenthaler and Wuthrich 4 data analysis CYANA 2.1 Guntert, Mumenthaler and Wuthrich 5 data analysis AutoStructure 2.2.1 Huang, Tejero, Powers and Montelione 6 peak picking AutoStructure 2.2.1 Huang, Tejero, Powers and Montelione 7 chemical shift assignment AutoAssign 2.1 Zimmerman, Moseley, Kulikowski and Montelione 8 data analysis AutoAssign 2.1 Zimmerman, Moseley, Kulikowski and Montelione 9 chemical shift assignment XEASY 1.3.1.3 Bartels et al. 10 data analysis XEASY 1.3.1.3 Bartels et al. 11 peak picking XEASY 1.3.1.3 Bartels et al. 12 processing NMRPipe 2.3 Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 13 collection VNMR Varian