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How the HIV-1 nucleocapsid protein binds and destabilises the (-)primer binding site during reverse transcription
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 1 mM NCp7(12-55), 1 mM P(-)PBS, 3 mM ZnCl2, 30 mM sodium chloride, 0.2 mM MgCl2 90% H2O/10% D2O 30 6.5 ambient 293 2 2D 1H-1H TOCSY 1 mM NCp7(12-55), 1 mM P(-)PBS, 3 mM ZnCl2, 30 mM sodium chloride, 0.2 mM MgCl2 90% H2O/10% D2O 30 6.5 ambient 293 3 2D DQF-COSY 1 mM NCp7(12-55), 1 mM P(-)PBS, 3 mM ZnCl2, 30 mM sodium chloride, 0.2 mM MgCl2 90% H2O/10% D2O 30 6.5 ambient 293
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Refinement Method Details Software simulated annealing XwinNMR
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations,structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 19 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 collection XwinNMR 3.0 Bruker Biospin 2 processing XwinNMR 3.0 Bruker Biospin 3 refinement Discover 2.98 Accelrys