2JZN
Solution NMR structure of the productive complex between IIAMannose and IIBMannose of the mannose transporter of the E. coli phosphotransferase system
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 12C-filtered/13C-separated NOE | 0.5-1 mM see details IIAMan(H10E)+IIBMan | 100% D2O | 20 mM phosphate | 6.5 | ambient atm | 303 | |
2 | 15N-SEPARATED/13C-EDITED NOE | 0.5-1 mM see details IIAMan(H10E)+IIBMan | 90% H2O/10% D2O | 20 mM phosphate | 6.5 | ambient atm | 303 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DMX500 | 500 |
2 | Bruker | DMX600 | 600 |
3 | Bruker | DRX600 | 600 |
4 | Bruker | DRX800 | 800 |
NMR Refinement | ||
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Method | Details | Software |
conjoined rigid body/torsion angle simulated annealing | Coordinates of IIAMan (1PDO) and IIBMan (2JZH) are treated as rigid bodies with the interfacial side chains given torsional degrees of freedom. Residues 130-134 of IIAMan are also given torsional degrees of freedom since intermolecular NOEs were observed involving these residues although they are not visible in the electron density map of the X-ray structure of free IIAMan. Further details in publication. | X-PLOR NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | restrained regularized mean |
Conformers Calculated Total Number | 120 |
Conformers Submitted Total Number | 1 |
Representative Model | 1 (minimized average structure) |
Additional NMR Experimental Information | |
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Details | Triple resonance experiments for assignment. Quantitative J correlation experiments for heteronuclear scalar couplings. 3D and 2D isotope filtered/isotope-separated NOE experiments for intermolecular NOEs. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | X-PLOR NIH | 2.18.1 | Schwieters, Kuszewski, and Clore |
2 | refinement | X-PLOR NIH | 2.18.1 | Schwieters, Kuszewski, and Clore |