2JYI
Solution structure of MLL CXXC domain
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 1 mM [U-98% 13C; U-98% 15N] CXXC | 95% H2O/5% D2O | 0.3 | 7.1 | ambient atm | 298 | |
2 | 3D 1H-13C NOESY | 1 mM [U-98% 13C; U-98% 15N] CXXC | 95% H2O/5% D2O | 0.3 | 7.1 | ambient atm | 298 | |
3 | IPAP | 1 mM [U-98% 13C; U-98% 15N] CXXC | 95% H2O/5% D2O | 0.3 | 7.1 | ambient atm | 298 | |
4 | HNCO NCo | 1 mM [U-98% 13C; U-98% 15N] CXXC | 95% H2O/5% D2O | 0.3 | 7.1 | ambient atm | 298 | |
5 | HNCO CoCa | 1 mM [U-98% 13C; U-98% 15N] CXXC | 95% H2O/5% D2O | 0.3 | 7.1 | ambient atm | 298 | |
6 | IPAP | 1 mM [U-98% 13C; U-98% 15N] CXXC | 95% H2O/5% D2O | 0.3 | 7.1 | ambient atm | 298 | |
7 | HNCO NCo | 1 mM [U-98% 13C; U-98% 15N] CXXC | 95% H2O/5% D2O | 0.3 | 7.1 | ambient atm | 298 | |
8 | HNCO CoCa | 1 mM [U-98% 13C; U-98% 15N] CXXC | 95% H2O/5% D2O | 0.3 | 7.1 | ambient atm | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Varian | INOVA | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing, distance geometry | high temp annealing without rRDCs, low temp annealing with RDCs | Sparky |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 14 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | Sparky | 3.110 | Goddard |
2 | data analysis | Sparky | 3.110 | Goddard |
3 | peak picking | Sparky | 3.110 | Goddard |
4 | processing | NMRPipe | 2.5 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
5 | structure solution | CNS | 1.2 | Brunger, Adams, Clore, Gros, Nilges and Read |
6 | refinement | CNS | 1.2 | Brunger, Adams, Clore, Gros, Nilges and Read |