2JXT
Solution structure of 50S ribosomal protein LX from Methanobacterium thermoautotrophicum. Northeast Structural Genomics Consortium (NESG) target TR80
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D SIMULTANEOUS CN-NOESY | 1.07 mM [U-100% 13C; U-100% 15N] 50S protein | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
2 | 2D 1H-15N HSQC | 1.07 mM [U-100% 13C; U-100% 15N] 50S protein | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
3 | 3D HNCO | 1.07 mM [U-100% 13C; U-100% 15N] 50S protein | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
4 | 4,3D GFT CABCACONHN | 1.07 mM [U-100% 13C; U-100% 15N] 50S protein | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
5 | 4,3D GFT HNNCABCA | 1.07 mM [U-100% 13C; U-100% 15N] 50S protein | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
6 | 4,3D GFT HCCH | 1.07 mM [U-100% 13C; U-100% 15N] 50S protein | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
7 | 4,3D GFT HABCABCONHN | 1.07 mM [U-100% 13C; U-100% 15N] 50S protein | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
8 | 2D 1H-13C HSQC | 1.1 mM [U-10% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 6.5 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
2 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
molecular dynamics, simulated annealing, distance geometry, torsion angle dynamics | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
2 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
3 | data analysis | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
4 | data analysis | AutoStructure | 2.0.0 | Huang, Tejero, Powers and Montelione |
5 | chemical shift assignment | AutoAssign | Zimmerman, Moseley, Kulikowski and Montelione | |
6 | chemical shift assignment | XEASY | Bartels et al. | |
7 | data analysis | XEASY | Bartels et al. | |
8 | collection | TopSpin | Bruker Biospin | |
9 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
10 | collection | VNMR | Varian |