2JWO
A PHD finger motif in the C-terminus of RAG2 modulates recombination activity
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.5 mM [U-99% 13C; U-99% 15N] RAG2 PHD domain | 90% H2O/10% D2O | 0 | 7.2 | ambient | 298 | |
2 | 3D HNCA | 0.5 mM [U-99% 13C; U-99% 15N] RAG2 PHD domain | 90% H2O/10% D2O | 0 | 7.2 | ambient | 298 | |
3 | 3D HN(CO)CA | 0.5 mM [U-99% 13C; U-99% 15N] RAG2 PHD domain | 90% H2O/10% D2O | 0 | 7.2 | ambient | 298 | |
4 | 3D HNCACB | 0.5 mM [U-99% 13C; U-99% 15N] RAG2 PHD domain | 90% H2O/10% D2O | 0 | 7.2 | ambient | 298 | |
5 | 3D HNCO | 0.5 mM [U-99% 13C; U-99% 15N] RAG2 PHD domain | 90% H2O/10% D2O | 0 | 7.2 | ambient | 298 | |
6 | 3D 1H-13C NOESY | 0.5 mM [U-99% 13C; U-99% 15N] RAG2 PHD domain | 90% H2O/10% D2O | 0 | 7.2 | ambient | 298 | |
7 | 3D 1H-13C NOESY | 0.5 mM [U-99% 13C; U-99% 15N] RAG2 PHD domain | 90% H2O/10% D2O | 0 | 7.2 | ambient | 298 | |
8 | 3D HCCH-TOCSY | 0.5 mM [U-99% 13C; U-99% 15N] RAG2 PHD domain | 90% H2O/10% D2O | 0 | 7.2 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DMX | 500 |
2 | Varian | INOVA | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | NMRPipe |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | structure solution | DYANA | Guntert, Braun and Wuthrich | |
3 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
4 | data analysis | XEASY | Bartels et al. |