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Solution structure of the Somatomedin B domain from vitronectin produced in Pichia pastoris
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.4 mM [U-99% 13C; U-99% 15N] SMB 90% H2O/10% D2O 0 6.5 ambient 298 2 3D HNCO 0.4 mM [U-99% 13C; U-99% 15N] SMB 90% H2O/10% D2O 0 6.5 ambient 298 3 3D HNCA 0.4 mM [U-99% 13C; U-99% 15N] SMB 90% H2O/10% D2O 0 6.5 ambient 298 4 3D HNCACB 0.4 mM [U-99% 13C; U-99% 15N] SMB 90% H2O/10% D2O 0 6.5 ambient 298 5 3D HN(CO)CA 0.4 mM [U-99% 13C; U-99% 15N] SMB 90% H2O/10% D2O 0 6.5 ambient 298 6 3D HN(COCA)CB 0.4 mM [U-99% 13C; U-99% 15N] SMB 90% H2O/10% D2O 0 6.5 ambient 298 7 2D 1H-1H NOESY 0.7 mM SMB 90% H2O/10% D2O 0 6.5 ambient 298 8 3D 1H-13C NOESY 0.4 mM [U-99% 13C; U-99% 15N] SMB 90% H2O/10% D2O 0 6.5 ambient 298 9 3D 1H-15N NOESY 0.4 mM [U-99% 13C; U-99% 15N] SMB 90% H2O/10% D2O 0 6.5 ambient 298 10 3D HCCH-TOCSY 0.4 mM [U-99% 13C; U-99% 15N] SMB 90% H2O/10% D2O 0 6.5 ambient 298 11 3D 1H-15N TOCSY 0.4 mM [U-99% 13C; U-99% 15N] SMB 90% H2O/10% D2O 0 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian UNITY 750
NMR Refinement Method Details Software molecular dynamics Pronto
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment Pronto Kj r, Andersen and Poulsen 2 processing NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 data analysis Sparky Goddard 4 structure solution CYANA Guntert, Mumenthaler and Wuthrich 5 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read