2JP1
Solution structure of the alternative conformation of XCL1/Lymphotactin
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 1.0 mM XCL1 U-15N/13C, 20 mM sodium phosphate, 95% H2O, 5% D2O | 95% H2O/5% D2O | 22 | 6.0 | AMBIENT | 313 | |
2 | 3D_13C-separated_NOESY | 1.0 mM XCL1 U-15N/13C, 20 mM sodium phosphate, 95% H2O, 5% D2O | 95% H2O/5% D2O | 22 | 6.0 | AMBIENT | 313 | |
4 | 3D_13C-F1-filtered_13C-F3-separated_NOESY | 0.6 mM XCL1 U-15N/13C, 0.6 mM XCL1 unlabeled, 20 mM sodium phosphate, 95% H2O, 5% D2O | 95% H2O/5% D2O | 22 | 6.0 | AMBIENT | 313 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
NMR Refinement | ||
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Method | Details | Software |
AUTOMATED METHODS WERE USED FOR BACKBONE CHEMICAL SHIFT ASSIGNMENT AND ITERATIVE NOE REFINEMENT. FINAL STRUCTURES WERE OBTAINED BY MOLECULAR DYNAMICS IN EXPLICIT SOLVENT | HOMODIMER STRUCTURES ARE BASED ON A TOTAL OF 1295 NOE CONSTRAINTS ( 320 INTRA, 370 SEQUENTIAL, 104 MEDIUM, 420 LONG RANGE and 81 INTERMONOMER CONSTRAINTS) AND 131 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS. CONSTRAINT WERE IN ONE ASSIGNED AND VALIDATED IN ONE MONOMER AND THEN DUPLICATED TO GENERATE A SYMMETRY RELATED CONSTRAINT IN THE SECOND MONOMER. CONSTRAINT TOTALS LISTED ABOVE INCLUDE CONSTRAINTS FROM BOTH MONOMERS. | Xplor-NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | Xplor-NIH | 2.9.3 | SCHWIETERS,C.D.,KUSZEWSKI,J.J.,TJANDRA,N.,CLORE,G.M. |
2 | collection | XwinNMR | 3.5 | Bruker |
3 | processing | NMRPipe | 2004 | Delagio,F. et al. |
4 | data analysis | XEASY | 1.3 | Eccles, C., Guntert, P., Billeter, M., Wuthrich, K. |
5 | data analysis | SPSCAN | 1.1.0 | R.W. Glaser |
6 | data analysis | GARANT | 2.1 | C. Bartels |
7 | structural calculation | CYANA | 2.1 | Guntert, P. |