☰ Navigation Tabs
NMR solution structure of YkvR protein from Bacillus subtilis: NESG target SR358
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D CBCA(CO)NH 1.17 mM protein, 1.0 mM sodium azide, 95% H2O, 5% D2O 95% H2O/5% D2O 5.11 6.5 ambient 293 2 3D HNCACB 1.17 mM protein, 1.0 mM sodium azide, 95% H2O, 5% D2O 95% H2O/5% D2O 5.11 6.5 ambient 293 3 2D 1H-15N HSQC 1.17 mM protein, 1.0 mM sodium azide, 95% H2O, 5% D2O 95% H2O/5% D2O 5.11 6.5 ambient 293 4 2D 1H-13C HSQC 1.17 mM protein, 1.0 mM sodium azide, 95% H2O, 5% D2O 95% H2O/5% D2O 5.11 6.5 ambient 293 5 3D HNCO 1.17 mM protein, 1.0 mM sodium azide, 95% H2O, 5% D2O 95% H2O/5% D2O 5.11 6.5 ambient 293 6 3D HBHA(CO)NH 1.17 mM protein, 1.0 mM sodium azide, 95% H2O, 5% D2O 95% H2O/5% D2O 5.11 6.5 ambient 293 7 3D HNHA 1.17 mM protein, 1.0 mM sodium azide, 95% H2O, 5% D2O 95% H2O/5% D2O 5.11 6.5 ambient 293 8 3D HCCH-TOCSY 1.17 mM protein, 1.0 mM sodium azide 100% D2O 5.11 6.5 ambient 293 9 3D 1H-15N NOESY 1.17 mM protein, 1.0 mM sodium azide, 95% H2O, 5% D2O 95% H2O/5% D2O 5.11 6.5 ambient 293 10 3D 1H-13C NOESY 1.17 mM protein, 1.0 mM sodium azide 100% D2O 5.11 6.5 ambient 293
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600 2 Bruker AVANCE 600 3 Bruker AVANCE 800
NMR Refinement Method Details Software distance geometry AutoAssign
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 56 Conformers Submitted Total Number 10 Representative Model 1 (minimized average structure)
Computation: NMR Software # Classification Version Software Name Author 1 data analysis AutoAssign 2.1 Zimmerman, Moseley, Kulikowski, Montelione 2 data analysis AVS Moseley and Montelione 3 processing AVS Moseley and Montelione 4 refinement AutoStructure Huang, Swapana, Rajan, Ke, Xia, Shukla, Inouye and Montelione 5 structure solution AutoStructure Huang, Swapana, Rajan, Ke, Xia, Shukla, Inouye and Montelione 6 structure solution DYANA Guntert, Braun and Wuthrich 7 refinement DYANA Guntert, Braun and Wuthrich 8 refinement CNS 1.1 Brunger, Adams, Clore, Gros, Nilges and Read 9 refinement X-PLOR 2.0.6 Brunger