X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2JLUPDB ENTRY 2JLU

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.0639.96

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 133.023α = 90
b = 104.794β = 115.91
c = 72.974γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODE

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.231.91000.0813.34.21939972
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.31000.582.34.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2JLU2.2204334423041000.194370.192020.23841RANDOM35.237
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.852.21-1.571.65
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.497
r_dihedral_angle_3_deg15.938
r_dihedral_angle_4_deg15.53
r_dihedral_angle_1_deg5.459
r_scangle_it1.685
r_angle_refined_deg1.237
r_scbond_it1.037
r_mcangle_it0.781
r_mcbond_it0.444
r_nbtor_refined0.297
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.497
r_dihedral_angle_3_deg15.938
r_dihedral_angle_4_deg15.53
r_dihedral_angle_1_deg5.459
r_scangle_it1.685
r_angle_refined_deg1.237
r_scbond_it1.037
r_mcangle_it0.781
r_mcbond_it0.444
r_nbtor_refined0.297
r_symmetry_vdw_refined0.205
r_nbd_refined0.191
r_xyhbond_nbd_refined0.147
r_symmetry_hbond_refined0.096
r_chiral_restr0.079
r_bond_refined_d0.008
r_gen_planes_refined0.003
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7211
Nucleic Acid Atoms276
Solvent Atoms357
Heterogen Atoms70

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling