X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2JLUPDB ENTRY 2JLU

Crystallization

Crystal Properties
Matthews coefficientSolvent content
1.9837.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 132.66α = 90
b = 105.192β = 117.66
c = 72.435γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODE

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.32.499.30.1311.64.9444542
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.498.60.52.74.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2JLU1.92057632310587.610.193490.190490.24801RANDOM25.077
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.430.6-1.110.24
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.696
r_dihedral_angle_4_deg16.588
r_dihedral_angle_3_deg16.108
r_dihedral_angle_1_deg5.813
r_scangle_it2.153
r_scbond_it1.354
r_angle_refined_deg1.338
r_mcangle_it0.941
r_mcbond_it0.565
r_nbtor_refined0.3
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.696
r_dihedral_angle_4_deg16.588
r_dihedral_angle_3_deg16.108
r_dihedral_angle_1_deg5.813
r_scangle_it2.153
r_scbond_it1.354
r_angle_refined_deg1.338
r_mcangle_it0.941
r_mcbond_it0.565
r_nbtor_refined0.3
r_symmetry_vdw_refined0.207
r_nbd_refined0.196
r_symmetry_hbond_refined0.148
r_xyhbond_nbd_refined0.146
r_chiral_restr0.093
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7218
Nucleic Acid Atoms256
Solvent Atoms716
Heterogen Atoms78

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling