X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2JLQPDB ENTRY 2JLQ

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.0338.81

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 132.033α = 90
b = 105.497β = 117.54
c = 72.517γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODE

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1229.896.50.0917.46.4547982
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.186.40.384.26.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2JLQ2.042051971277997.770.199350.197070.24198RANDOM24.244
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.920.5-0.860.41
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.862
r_dihedral_angle_3_deg16.922
r_dihedral_angle_4_deg14.838
r_dihedral_angle_1_deg6.01
r_scangle_it2.445
r_scbond_it1.522
r_angle_refined_deg1.329
r_mcangle_it1.083
r_mcbond_it0.635
r_nbtor_refined0.301
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.862
r_dihedral_angle_3_deg16.922
r_dihedral_angle_4_deg14.838
r_dihedral_angle_1_deg6.01
r_scangle_it2.445
r_scbond_it1.522
r_angle_refined_deg1.329
r_mcangle_it1.083
r_mcbond_it0.635
r_nbtor_refined0.301
r_xyhbond_nbd_refined0.279
r_symmetry_vdw_refined0.255
r_nbd_refined0.199
r_symmetry_hbond_refined0.196
r_chiral_restr0.092
r_bond_refined_d0.011
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7208
Nucleic Acid Atoms256
Solvent Atoms407
Heterogen Atoms24

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing