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Hsp90 alpha ATPase domain with bound small molecule fragment
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1YER PDB ENTRY 1YER
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.8 0.1M SODIUM CACODYLATE PH 6.8 0.2M MAGNESIUM CHLORIDE 20%(W/V) MPEG 2000
Crystal Properties Matthews coefficient Solvent content 2.96 59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.267 α = 90 b = 89.019 β = 90 c = 99.531 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2004-09-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 36 95 0.05 3.7 19531
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.01 90 0.16 5.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1YER 1.95 36.16 19531 1014 95.5 0.18 0.178 0.1868 0.217 0.2212 RANDOM 17.19
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.85 0.4 0.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.839 r_dihedral_angle_4_deg 15.887 r_dihedral_angle_3_deg 11.348 r_dihedral_angle_1_deg 5.542 r_angle_refined_deg 1.092 r_angle_other_deg 0.818 r_nbd_refined 0.2 r_symmetry_vdw_other 0.181 r_nbd_other 0.18 r_symmetry_hbond_refined 0.178
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.839 r_dihedral_angle_4_deg 15.887 r_dihedral_angle_3_deg 11.348 r_dihedral_angle_1_deg 5.542 r_angle_refined_deg 1.092 r_angle_other_deg 0.818 r_nbd_refined 0.2 r_symmetry_vdw_other 0.181 r_nbd_other 0.18 r_symmetry_hbond_refined 0.178 r_nbtor_refined 0.173 r_symmetry_vdw_refined 0.155 r_scangle_it 0.116 r_xyhbond_nbd_refined 0.114 r_mcangle_it 0.092 r_scbond_it 0.083 r_nbtor_other 0.082 r_mcbond_it 0.065 r_chiral_restr 0.064 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1627 Nucleic Acid Atoms Solvent Atoms 292 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement CrystalClear data reduction CrystalClear data scaling C-SEARCH phasing