2JHX

CRYSTAL STRUCTURE OF RHOGDI E155H, E157H MUTANT


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2BXWPDB ENTRY 2BXW

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.51.4 M SODIUM CITRATE 0.1 M HEPES PH 7.5
Crystal Properties
Matthews coefficientSolvent content
4.4272.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 130.124α = 90
b = 130.124β = 90
c = 162.885γ = 120
Symmetry
Space GroupH 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2005-11-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-BMAPS22-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.64099.70.073910.369501
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.61.6696.50.81.424.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2BXW1.692.8568064140199.50.1950.1940.219RANDOM15.64
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.25-0.12-0.250.37
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.731
r_dihedral_angle_4_deg13.657
r_dihedral_angle_3_deg12.813
r_dihedral_angle_1_deg5.911
r_scangle_it3.211
r_scbond_it2.45
r_angle_refined_deg2.211
r_angle_other_deg1.503
r_mcangle_it1.267
r_mcbond_it1.071
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.731
r_dihedral_angle_4_deg13.657
r_dihedral_angle_3_deg12.813
r_dihedral_angle_1_deg5.911
r_scangle_it3.211
r_scbond_it2.45
r_angle_refined_deg2.211
r_angle_other_deg1.503
r_mcangle_it1.267
r_mcbond_it1.071
r_symmetry_vdw_other0.27
r_symmetry_vdw_refined0.227
r_nbd_refined0.219
r_symmetry_hbond_refined0.211
r_nbd_other0.18
r_nbtor_refined0.178
r_xyhbond_nbd_refined0.137
r_chiral_restr0.096
r_nbtor_other0.08
r_bond_refined_d0.009
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2224
Nucleic Acid Atoms
Solvent Atoms428
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing