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CRYSTAL STRUCTURE OF RHOGDI K135H,K138H,K141H MUTANT
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BXW PDB ENTRY 2BXW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 1.4 M SODIUM CITRATE, 100 MM HEPES PH 7.5
Crystal Properties Matthews coefficient Solvent content 5 75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.316 α = 90 b = 75.316 β = 90 c = 91.283 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-11-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-BM APS 22-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 50 99.7 0.04 35.6 6 22205
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.02 99.8 0.34 4.9 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BXW 1.95 65.23 21112 1043 99.5 0.179 0.178 0.1843 0.209 0.2222 RANDOM 44.62
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.52 0.26 0.52 -0.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.205 r_dihedral_angle_4_deg 17.797 r_dihedral_angle_3_deg 12.333 r_dihedral_angle_1_deg 5.492 r_scangle_it 3.288 r_scbond_it 2.428 r_angle_refined_deg 2.328 r_angle_other_deg 1.519 r_mcangle_it 1.336 r_mcbond_it 1.166
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.205 r_dihedral_angle_4_deg 17.797 r_dihedral_angle_3_deg 12.333 r_dihedral_angle_1_deg 5.492 r_scangle_it 3.288 r_scbond_it 2.428 r_angle_refined_deg 2.328 r_angle_other_deg 1.519 r_mcangle_it 1.336 r_mcbond_it 1.166 r_symmetry_vdw_other 0.264 r_nbd_refined 0.195 r_nbtor_refined 0.174 r_nbd_other 0.172 r_symmetry_hbond_refined 0.155 r_symmetry_vdw_refined 0.138 r_xyhbond_nbd_refined 0.128 r_chiral_restr 0.1 r_nbtor_other 0.083 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1108 Nucleic Acid Atoms Solvent Atoms 133 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling AMoRE phasing