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Cyanomet Sperm Whale Myoglobin at 1.4A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1EBC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 3.2 M AMMONIUM SULPHATE AND 0.05 M PHOSPHATE BUFFER (PH 6.5)
Crystal Properties Matthews coefficient Solvent content 2.3 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.409 α = 90 b = 29.786 β = 104.93 c = 63.633 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 AREA DETECTOR MARRESEARCH MIRRORS 2005-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX10.1 SRS PX10.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.38 50 93.9 0.04 32 6.1 22431 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.38 1.43 72 0.18 5 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1EBC 1.4 61.43 22431 1195 94.8 0.181 0.18 0.282 0.234 0.3153 RANDOM 27.34
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 0.14 0.5 -0.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.096 r_dihedral_angle_4_deg 20.251 r_dihedral_angle_3_deg 15.158 r_dihedral_angle_1_deg 6.015 r_scangle_it 5.37 r_scbond_it 4.275 r_mcangle_it 3.324 r_mcbond_it 2.503 r_angle_refined_deg 2.176 r_angle_other_deg 2.176
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.096 r_dihedral_angle_4_deg 20.251 r_dihedral_angle_3_deg 15.158 r_dihedral_angle_1_deg 6.015 r_scangle_it 5.37 r_scbond_it 4.275 r_mcangle_it 3.324 r_mcbond_it 2.503 r_angle_refined_deg 2.176 r_angle_other_deg 2.176 r_nbd_refined 0.32 r_nbd_other 0.32 r_nbtor_refined 0.319 r_nbtor_other 0.319 r_symmetry_vdw_refined 0.247 r_symmetry_hbond_refined 0.214 r_xyhbond_nbd_refined 0.213 r_chiral_restr 0.156 r_bond_refined_d 0.018 r_bond_other_d 0.018 r_gen_planes_refined 0.014 r_gen_planes_other 0.014 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1216 Nucleic Acid Atoms Solvent Atoms 188 Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing