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Mutant (S23A) of Pseudomonas aeruginosa lectin II (PA-IIL) complexed with methyl-a-L-fucopyranoside
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UZV PDB ENTRY 1UZV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 0.2 M DIGYDRATED CALCIUM CHLORIDE, 0.1 M TRIHYDRATED SODIUM ACETATE (PH7.5), 20% ISO-PROPANOL, pH 7.50
Crystal Properties Matthews coefficient Solvent content 2.03 39.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.062 α = 90 b = 45.69 β = 94.21 c = 87.952 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD TOROIDAL MIRROR 2006-04-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 87.71 95.8 0.05 16.2 3.3 98919
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.33 93 0.35 2.6 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1UZV 1.3 87.71 84498 4421 95.9 0.171 0.169 0.197 RANDOM 12.86
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.42 -0.29 0.41 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.44 r_dihedral_angle_4_deg 22.368 r_dihedral_angle_3_deg 10.575 r_dihedral_angle_1_deg 6.646 r_scangle_it 2.767 r_scbond_it 1.823 r_angle_refined_deg 1.476 r_mcangle_it 1.441 r_mcbond_it 0.946 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.44 r_dihedral_angle_4_deg 22.368 r_dihedral_angle_3_deg 10.575 r_dihedral_angle_1_deg 6.646 r_scangle_it 2.767 r_scbond_it 1.823 r_angle_refined_deg 1.476 r_mcangle_it 1.441 r_mcbond_it 0.946 r_nbtor_refined 0.301 r_nbd_refined 0.217 r_symmetry_vdw_refined 0.211 r_symmetry_hbond_refined 0.152 r_xyhbond_nbd_refined 0.139 r_chiral_restr 0.102 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3304 Nucleic Acid Atoms Solvent Atoms 592 Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing