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Structure of a pectin binding carbohydrate binding module determined in an monoclinic crystal form.
Crystallization Crystal Properties Matthews coefficient Solvent content 1.87 33.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.205 α = 90 b = 34.729 β = 120.58 c = 86.711 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 20 89.3 0.03 22.3 3.7 56372 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.4 38.6 0.26 2 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.35 20 53514 2858 89.3 0.145 0.143 0.1555 0.18 0.1914 RANDOM 13.66
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.24 -0.23 0.28 -0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.778 r_scangle_it 5.251 r_scbond_it 3.41 r_mcangle_it 2.527 r_angle_refined_deg 1.924 r_mcbond_it 1.693 r_angle_other_deg 1.282 r_symmetry_hbond_refined 0.387 r_symmetry_vdw_other 0.34 r_nbd_other 0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.778 r_scangle_it 5.251 r_scbond_it 3.41 r_mcangle_it 2.527 r_angle_refined_deg 1.924 r_mcbond_it 1.693 r_angle_other_deg 1.282 r_symmetry_hbond_refined 0.387 r_symmetry_vdw_other 0.34 r_nbd_other 0.26 r_xyhbond_nbd_refined 0.203 r_chiral_restr 0.201 r_nbd_refined 0.189 r_symmetry_vdw_refined 0.16 r_nbtor_other 0.091 r_gen_planes_other 0.036 r_gen_planes_refined 0.02 r_bond_refined_d 0.019 r_bond_other_d 0.008 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2172 Nucleic Acid Atoms Solvent Atoms 486 Heterogen Atoms 78
Software Software Software Name Purpose REFMAC refinement MOLREP phasing