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Structure of the N-oxygenase AurF from Streptomyces thioluteus
Crystallization Crystal Properties Matthews coefficient Solvent content 2.96 58.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.222 α = 90 b = 115.438 β = 90 c = 125.801 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.11 62 100 0.07 18.7 7.4 52924 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.11 2.18 100 0.28 5.3 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 2.11 30 50255 2645 100 0.198 0.196 0.2009 0.242 0.2456 RANDOM 42.73
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.72 0.86 0.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.59 r_dihedral_angle_4_deg 16.248 r_dihedral_angle_3_deg 16.199 r_dihedral_angle_1_deg 5.576 r_scangle_it 3.559 r_scbond_it 2.281 r_mcangle_it 1.618 r_angle_refined_deg 1.417 r_mcbond_it 1.023 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.59 r_dihedral_angle_4_deg 16.248 r_dihedral_angle_3_deg 16.199 r_dihedral_angle_1_deg 5.576 r_scangle_it 3.559 r_scbond_it 2.281 r_mcangle_it 1.618 r_angle_refined_deg 1.417 r_mcbond_it 1.023 r_nbtor_refined 0.302 r_symmetry_vdw_refined 0.221 r_nbd_refined 0.213 r_xyhbond_nbd_refined 0.201 r_symmetry_hbond_refined 0.164 r_chiral_restr 0.101 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4975 Nucleic Acid Atoms Solvent Atoms 437 Heterogen Atoms 32
Software Software Software Name Purpose ARP/wARP model building XDS data reduction SHELX phasing SHARP phasing PHASER phasing ARP/wARP phasing REFMAC phasing Coot phasing REFMAC refinement