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Protein kinase MK2 in complex with an inhibitor (crystal form-2, co- crystallization)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2JBO PDB ENTRY 2JBO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 1.8-2.0M SODIUM POTTASIUM PHOSPHATE PH 7.5, 0.0003M INHIBITOR
Crystal Properties Matthews coefficient Solvent content 3 59.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 139.983 α = 90 b = 215.564 β = 90 c = 179.9 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-04-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 49.1 97 0.1 12.8 3.4 78680 96.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.3 3.38 95.1 0.6 2 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2JBO 3.31 49.08 78629 3911 0.215 0.1949 0.279 0.1856 RANDOM 82.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.04 8.32 -11.37
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 24.9 c_scangle_it 22.15 c_scbond_it 18.13 c_mcangle_it 13.18 c_mcbond_it 8.77 c_angle_deg 1.7 c_improper_angle_d 1.08 c_bond_d 0.017 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 24.9 c_scangle_it 22.15 c_scbond_it 18.13 c_mcangle_it 13.18 c_mcbond_it 8.77 c_angle_deg 1.7 c_improper_angle_d 1.08 c_bond_d 0.017 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 27063 Nucleic Acid Atoms Solvent Atoms 18 Heterogen Atoms 286
Software Software Software Name Purpose HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing BEAST phasing CNX refinement