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Structure of PBP-A, L158E mutant. Acyl-enzyme complex with penicillin- G.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 SEE ENTRY 2J9O, pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.27 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.579 α = 90 b = 91.525 β = 90 c = 145.708 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRROR 1, FLAT PRE-MIRROR. MIRROR 2, BENT, VERTICALLY FOCUSSING 2005-04-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 28 99.3 0.04 16.7 3.3 126686 30.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.75 100 0.45 2.7 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.7 77.61 126686 6364 99.3 0.18 0.178 0.186 0.218 RANDOM 24.88
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.913 -0.502 -0.411
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.679 r_dihedral_angle_4_deg 17.786 r_dihedral_angle_3_deg 13.811 r_dihedral_angle_1_deg 5.614 r_scangle_it 3.779 r_scbond_it 2.487 r_angle_refined_deg 1.555 r_mcangle_it 1.218 r_mcbond_it 1.075 r_nbd_refined 0.226
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.679 r_dihedral_angle_4_deg 17.786 r_dihedral_angle_3_deg 13.811 r_dihedral_angle_1_deg 5.614 r_scangle_it 3.779 r_scbond_it 2.487 r_angle_refined_deg 1.555 r_mcangle_it 1.218 r_mcbond_it 1.075 r_nbd_refined 0.226 r_symmetry_hbond_refined 0.182 r_nbtor_refined 0.173 r_symmetry_vdw_refined 0.168 r_xyhbond_nbd_refined 0.164 r_chiral_restr 0.092 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8213 Nucleic Acid Atoms Solvent Atoms 904 Heterogen Atoms 98
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling