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Geranylgeranyl diphosphate synthase from Sinapis alba in complex with GGPP
Crystallization Crystal Properties Matthews coefficient Solvent content 2.23 44.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.803 α = 90 b = 91.551 β = 96.89 c = 56.286 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 34 95.6 0.04 10.6 2 94523 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 91.5 0.48 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 32 46010 2458 96.7 0.172 0.17 0.1773 0.209 0.2139 RANDOM 17.74
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 -0.04 0.54 -0.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.66 r_dihedral_angle_4_deg 16.436 r_dihedral_angle_3_deg 14.485 r_dihedral_angle_1_deg 5.297 r_scangle_it 3.884 r_scbond_it 2.798 r_angle_refined_deg 1.689 r_mcangle_it 1.462 r_mcbond_it 1.29 r_angle_other_deg 1.064
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.66 r_dihedral_angle_4_deg 16.436 r_dihedral_angle_3_deg 14.485 r_dihedral_angle_1_deg 5.297 r_scangle_it 3.884 r_scbond_it 2.798 r_angle_refined_deg 1.689 r_mcangle_it 1.462 r_mcbond_it 1.29 r_angle_other_deg 1.064 r_symmetry_vdw_other 0.284 r_symmetry_vdw_refined 0.236 r_nbd_refined 0.228 r_nbd_other 0.195 r_nbtor_refined 0.178 r_xyhbond_nbd_refined 0.151 r_symmetry_hbond_refined 0.134 r_chiral_restr 0.103 r_nbtor_other 0.089 r_bond_refined_d 0.019 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4173 Nucleic Acid Atoms Solvent Atoms 190 Heterogen Atoms 47
Software Software Software Name Purpose REFMAC refinement