2J0M

Crystal structure a two-chain complex between the FERM and kinase domains of focal adhesion kinase.


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1MP8PDB ENTRY 1MP8 AND 2AEH
experimental modelPDB 2AEHPDB ENTRY 1MP8 AND 2AEH

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18.516% PEG20K, 250MM NACL, 100MM TRIS PH8.5, 10MM TCEP, pH 8.50
Crystal Properties
Matthews coefficientSolvent content
2.550.8

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 67.49α = 90
b = 90.6β = 90
c = 242.61γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCD2005-06-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X29ANSLSX29A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.83093.30.111.54.917515
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.82.994.90.552.734.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1MP8 AND 2AEH2.827.39165948741000.2240.2210.282RANDOM59.3
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.45-0.080.53
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.832
r_dihedral_angle_3_deg19.151
r_dihedral_angle_4_deg16.353
r_dihedral_angle_1_deg6.035
r_scangle_it1.334
r_angle_refined_deg1.304
r_scbond_it0.8
r_mcangle_it0.7
r_mcbond_it0.41
r_nbtor_refined0.31
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.832
r_dihedral_angle_3_deg19.151
r_dihedral_angle_4_deg16.353
r_dihedral_angle_1_deg6.035
r_scangle_it1.334
r_angle_refined_deg1.304
r_scbond_it0.8
r_mcangle_it0.7
r_mcbond_it0.41
r_nbtor_refined0.31
r_nbd_refined0.222
r_symmetry_vdw_refined0.197
r_xyhbond_nbd_refined0.143
r_chiral_restr0.09
r_symmetry_hbond_refined0.064
r_bond_refined_d0.012
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4720
Nucleic Acid Atoms
Solvent Atoms53
Heterogen Atoms35

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing