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Crystal structure a two-chain complex between the FERM and kinase domains of focal adhesion kinase.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MP8 PDB ENTRY 1MP8 AND 2AEH experimental model PDB 2AEH PDB ENTRY 1MP8 AND 2AEH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 16% PEG20K, 250MM NACL, 100MM TRIS PH8.5, 10MM TCEP, pH 8.50
Crystal Properties Matthews coefficient Solvent content 2.5 50.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.49 α = 90 b = 90.6 β = 90 c = 242.61 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2005-06-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 30 93.3 0.1 11.5 4.9 17515
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 94.9 0.55 2.73 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1MP8 AND 2AEH 2.8 27.39 16594 874 100 0.224 0.221 0.2129 0.282 0.2766 RANDOM 59.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.45 -0.08 0.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.832 r_dihedral_angle_3_deg 19.151 r_dihedral_angle_4_deg 16.353 r_dihedral_angle_1_deg 6.035 r_scangle_it 1.334 r_angle_refined_deg 1.304 r_scbond_it 0.8 r_mcangle_it 0.7 r_mcbond_it 0.41 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.832 r_dihedral_angle_3_deg 19.151 r_dihedral_angle_4_deg 16.353 r_dihedral_angle_1_deg 6.035 r_scangle_it 1.334 r_angle_refined_deg 1.304 r_scbond_it 0.8 r_mcangle_it 0.7 r_mcbond_it 0.41 r_nbtor_refined 0.31 r_nbd_refined 0.222 r_symmetry_vdw_refined 0.197 r_xyhbond_nbd_refined 0.143 r_chiral_restr 0.09 r_symmetry_hbond_refined 0.064 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4720 Nucleic Acid Atoms Solvent Atoms 53 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing