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Dark state structure of the BLUF domain of the rhodobacterial protein AppA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 pH 8.50
Crystal Properties Matthews coefficient Solvent content 2.99 58.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 127.71 α = 90 b = 127.71 β = 90 c = 65.35 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 10 99 0.06 15.4 6 17447 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.36 99.9 0.26 5.5 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 9.99 13428 707 100 0.209 0.208 0.2085 0.233 0.2357 RANDOM 22.96
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.18 0.59 1.18 -1.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.289 r_dihedral_angle_3_deg 19.986 r_dihedral_angle_4_deg 17.235 r_dihedral_angle_1_deg 6.359 r_scangle_it 3.215 r_scbond_it 2.016 r_angle_refined_deg 1.473 r_mcangle_it 1.197 r_mcbond_it 0.755 r_nbtor_refined 0.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.289 r_dihedral_angle_3_deg 19.986 r_dihedral_angle_4_deg 17.235 r_dihedral_angle_1_deg 6.359 r_scangle_it 3.215 r_scbond_it 2.016 r_angle_refined_deg 1.473 r_mcangle_it 1.197 r_mcbond_it 0.755 r_nbtor_refined 0.297 r_symmetry_vdw_refined 0.275 r_nbd_refined 0.214 r_xyhbond_nbd_refined 0.172 r_symmetry_hbond_refined 0.126 r_chiral_restr 0.098 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1700 Nucleic Acid Atoms Solvent Atoms 60 Heterogen Atoms 78
Software Software Software Name Purpose XDS data reduction XSCALE data scaling SHELX phasing SHARP phasing REFMAC refinement