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RmlC M. tuberculosis with dTDP-rhamnose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 23% (w/v) polyethylene glycol (PEG) 8000, 0.2 M calcium acetate hydrate, 0.1 M sodium cacodylate (pH 5.8)
Crystal Properties Matthews coefficient Solvent content 2.14 42.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.778 α = 89.9 b = 56.845 β = 78.28 c = 90.7 γ = 82.33
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.1 SRS PX14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 36 93 0.06 7.5 2.2 84823
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 89 0.3 1.8 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.79 36.2 71906 3784 92.6 0.154 0.151 0.1702 0.196 0.21 RANDOM 25.84
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.18 0.09 -0.01 0.09 0.04 0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.436 r_dihedral_angle_4_deg 16.951 r_dihedral_angle_3_deg 12.295 r_dihedral_angle_1_deg 5.713 r_sphericity_free 3.814 r_scangle_it 2.644 r_scbond_it 1.828 r_sphericity_bonded 1.757 r_angle_refined_deg 1.339 r_rigid_bond_restr 1.187
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.436 r_dihedral_angle_4_deg 16.951 r_dihedral_angle_3_deg 12.295 r_dihedral_angle_1_deg 5.713 r_sphericity_free 3.814 r_scangle_it 2.644 r_scbond_it 1.828 r_sphericity_bonded 1.757 r_angle_refined_deg 1.339 r_rigid_bond_restr 1.187 r_mcangle_it 1.186 r_mcbond_it 0.864 r_nbtor_refined 0.303 r_symmetry_vdw_refined 0.235 r_nbd_refined 0.209 r_symmetry_hbond_refined 0.169 r_xyhbond_nbd_refined 0.156 r_chiral_restr 0.092 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6172 Nucleic Acid Atoms Solvent Atoms 1162 Heterogen Atoms 140
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling