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Wee1 kinase complex with inhibitor PD311839
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1X8B PDB entry 1X8B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 HEPES, sodium chloride, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.93 58.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.465 α = 90 b = 69.465 β = 90 c = 157.344 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH Pt/Pd ULE mirrors 2002-03-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.000 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.89 50 92.7 0.088 24 7.9 29232 29232
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.89 1.96 71.9 0.329 2.1 5.3 2204
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1X8B 1.9 50 27533 1472 92.81 0.25042 0.2479 0.242 0.29862 0.293 RANDOM 37.326
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.56 1.56 -3.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.642 r_dihedral_angle_4_deg 21.32 r_dihedral_angle_3_deg 17.002 r_dihedral_angle_1_deg 6.314 r_scangle_it 4.653 r_scbond_it 2.992 r_mcangle_it 2.085 r_angle_refined_deg 1.933 r_mcbond_it 1.284 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.642 r_dihedral_angle_4_deg 21.32 r_dihedral_angle_3_deg 17.002 r_dihedral_angle_1_deg 6.314 r_scangle_it 4.653 r_scbond_it 2.992 r_mcangle_it 2.085 r_angle_refined_deg 1.933 r_mcbond_it 1.284 r_nbtor_refined 0.304 r_nbd_refined 0.234 r_symmetry_vdw_refined 0.224 r_xyhbond_nbd_refined 0.139 r_chiral_restr 0.132 r_symmetry_hbond_refined 0.092 r_bond_refined_d 0.02 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2027 Nucleic Acid Atoms Solvent Atoms 94 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling AMoRE phasing