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Structure of Protein of Unknown Function SA2116 from Staphylococcus aureus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 294 0.2 M Proline, 0.1 M HEPES buffer, 10% PEG3350, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 3.14 60.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.588 α = 90 b = 107.588 β = 90 c = 39.105 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC 2005-06-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97910 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 35.2 98.4 0.102 49.2 20.4 11546 11546 63.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 88.4 0.797 3 14.5 1010
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 35.2 11531 11531 1121 98.4 0.2057 0.2057 0.2015 0.1926 0.2452 0.2377 RANDOM 49.987
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.5 -0.75 -1.5 2.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.033 r_dihedral_angle_3_deg 18.581 r_dihedral_angle_4_deg 15.659 r_dihedral_angle_1_deg 8.558 r_scangle_it 4.162 r_scbond_it 2.699 r_mcangle_it 1.792 r_angle_refined_deg 1.664 r_mcbond_it 0.951 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.033 r_dihedral_angle_3_deg 18.581 r_dihedral_angle_4_deg 15.659 r_dihedral_angle_1_deg 8.558 r_scangle_it 4.162 r_scbond_it 2.699 r_mcangle_it 1.792 r_angle_refined_deg 1.664 r_mcbond_it 0.951 r_nbtor_refined 0.311 r_symmetry_vdw_refined 0.245 r_nbd_refined 0.219 r_symmetry_hbond_refined 0.188 r_xyhbond_nbd_refined 0.162 r_chiral_restr 0.142 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1367 Nucleic Acid Atoms Solvent Atoms 82 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling SHELXD phasing CNS phasing ARP/wARP model building