☰ Navigation Tabs
Crystal structure of PCNA3 monomer from Sulfolobus solfataricus.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UD9 PDB entry 1UD9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 12.5% PEG 3350, 0.15 M NH4Cl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.21 44.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.773 α = 90 b = 85.773 β = 90 c = 264.21 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2004-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 1.100 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 96.3 0.102 32.2 23.3 75947 75947
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.92 65.6 0.491 2.2 5.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1UD9 1.9 29.62 75802 74272 1530 100 0.20493 0.20401 0.2101 0.25055 0.258 RANDOM 38.571
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.38 -0.38 0.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.681 r_dihedral_angle_4_deg 16.618 r_dihedral_angle_3_deg 15.974 r_dihedral_angle_1_deg 7.262 r_scangle_it 3.582 r_scbond_it 2.505 r_angle_refined_deg 1.641 r_mcangle_it 1.393 r_mcbond_it 1.157 r_angle_other_deg 1.096
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.681 r_dihedral_angle_4_deg 16.618 r_dihedral_angle_3_deg 15.974 r_dihedral_angle_1_deg 7.262 r_scangle_it 3.582 r_scbond_it 2.505 r_angle_refined_deg 1.641 r_mcangle_it 1.393 r_mcbond_it 1.157 r_angle_other_deg 1.096 r_mcbond_other 0.35 r_symmetry_vdw_other 0.264 r_symmetry_vdw_refined 0.242 r_nbd_refined 0.215 r_nbd_other 0.188 r_xyhbond_nbd_refined 0.182 r_nbtor_refined 0.175 r_symmetry_hbond_refined 0.175 r_chiral_restr 0.118 r_nbtor_other 0.088 r_bond_refined_d 0.016 r_xyhbond_nbd_other 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.003 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7736 Nucleic Acid Atoms Solvent Atoms 535 Heterogen Atoms 80
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-2000 data reduction SCALEPACK data scaling CNS phasing