2IIJ
Structure of human Asf1a in complex with histone H3
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_13C-separated_NOESY | 2 mM Asf1 (1-156) U-15N/13C/ 2.5 mM Histone H3 (122-135) Tris D11 20 mM, NaN3 0.1%, EDTA 1 mM, DSS 0.1 mM pH 7.4, 90% H2O, 10% D2O | 90% H2O/10% D2O | 7.4 | 1 atm | 300 | ||
2 | 3D_15N-separated_NOESY | 2 mM Asf1 (1-156) U-15N/13C/ 2.5 mM Histone H3 (122-135) Tris D11 20 mM, NaN3 0.1%, EDTA 1 mM, DSS 0.1 mM pH 7.4, 90% H2O, 10% D2O | 90% H2O/10% D2O | 7.4 | 1 atm | 300 | ||
3 | 3D_12C14N_filtered_13Cseparated_NOESY | 2 mM Asf1 (1-156) U-15N/13C/ 2.5 mM Histone H3 (122-135) Tris D11 20 mM, NaN3 0.1%, EDTA 1 mM, DSS 0.1 mM pH 7.4, 90% H2O, 10% D2O | 90% H2O/10% D2O | 7.4 | 1 atm | 300 | ||
4 | HNHA | 2 mM Asf1 (1-156) U-15N/13C/ 2.5 mM Histone H3 (122-135) Tris D11 20 mM, NaN3 0.1%, EDTA 1 mM, DSS 0.1 mM pH 7.4, 90% H2O, 10% D2O | 90% H2O/10% D2O | 7.4 | 1 atm | 300 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
2 | Bruker | DRX | 800 |
NMR Refinement | ||
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Method | Details | Software |
distance geometry, simulated annealing, molecular dynamics | the structures are based on a total of 5185 restraints, 4945 are NOE-derived distance constraints, 170 dihedral angle restraints, 70 distance restraints from hydrogen bonds. | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 30 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 2.5 | bruker |
2 | data analysis | Sparky | 3.111 | T. D. Goddard and D. G. Kneller, University of California, San Francisco |
3 | structure solution | ARIA | 2.0 | M. Nilges, Institut Pasteur, France |
4 | refinement | ARIA | 2.0 | M. Nilges, Institut Pasteur, France |