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Anabaena sensory rhodopsin transducer
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.2 293 100 mM Na2HPO4, 100 mM citric acid, 35% (v/v) 2-propanol, pH 4.2, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.93 36.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.152 α = 90 b = 78.842 β = 106.81 c = 70.582 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD 2004-05-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 28 98.9 0.081 8.1 3.3 29903
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 92.9 0.357 2.3 2800
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 28.23 27875 2774 100 0.22 0.215 0.2173 0.26 0.2623 RANDOM 21.898
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.286 r_dihedral_angle_4_deg 20.32 r_dihedral_angle_3_deg 14.542 r_dihedral_angle_1_deg 6.363 r_scangle_it 5.09 r_scbond_it 3.073 r_mcangle_it 2.286 r_angle_refined_deg 1.932 r_mcbond_it 1.436 r_symmetry_vdw_refined 0.386
Show All KeysRMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.286 r_dihedral_angle_4_deg 20.32 r_dihedral_angle_3_deg 14.542 r_dihedral_angle_1_deg 6.363 r_scangle_it 5.09 r_scbond_it 3.073 r_mcangle_it 2.286 r_angle_refined_deg 1.932 r_mcbond_it 1.436 r_symmetry_vdw_refined 0.386 r_symmetry_hbond_refined 0.357 r_nbtor_refined 0.317 r_nbd_refined 0.216 r_xyhbond_nbd_refined 0.174 r_chiral_restr 0.119 r_bond_refined_d 0.021 r_gen_planes_refined 0.009
Hide All KeysNon-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2908 Nucleic Acid Atoms Solvent Atoms 201 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction