2IHB

Crystal structure of the heterodimeric complex of human RGS10 and activated Gi alpha 3


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1AGRSwissmodel based on the coordinates of PDB entries 1agr, 1ezt, 1ezy, 2bv1
experimental modelPDB 1EZTSwissmodel based on the coordinates of PDB entries 1agr, 1ezt, 1ezy, 2bv1
experimental modelPDB 1EZYSwissmodel based on the coordinates of PDB entries 1agr, 1ezt, 1ezy, 2bv1
experimental modelPDB 2BV1Swissmodel based on the coordinates of PDB entries 1agr, 1ezt, 1ezy, 2bv1

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.52930.2M (NH4)2SO4, 0.1M Bis-Tris, pH 5.5, 25% PEG3350 , VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
3.3363.08

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 100.628α = 90
b = 100.628β = 90
c = 145.359γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2006-05-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA0.97925SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.75097.22081520470
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.72.7580.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTSwissmodel based on the coordinates of PDB entries 1agr, 1ezt, 1ezy, 2bv12.7147.61943019430104097.420.209130.209130.207630.23632RANDOM48.111
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.072.07-4.13
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.469
r_dihedral_angle_4_deg21.765
r_dihedral_angle_3_deg15.248
r_dihedral_angle_1_deg5.349
r_scangle_it1.47
r_angle_refined_deg1.057
r_scbond_it0.895
r_angle_other_deg0.806
r_mcangle_it0.702
r_mcbond_it0.386
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.469
r_dihedral_angle_4_deg21.765
r_dihedral_angle_3_deg15.248
r_dihedral_angle_1_deg5.349
r_scangle_it1.47
r_angle_refined_deg1.057
r_scbond_it0.895
r_angle_other_deg0.806
r_mcangle_it0.702
r_mcbond_it0.386
r_nbd_refined0.213
r_nbtor_refined0.186
r_symmetry_vdw_other0.178
r_nbd_other0.173
r_xyhbond_nbd_refined0.141
r_metal_ion_refined0.102
r_nbtor_other0.083
r_symmetry_vdw_refined0.056
r_chiral_restr0.055
r_mcbond_other0.053
r_symmetry_hbond_refined0.027
r_bond_refined_d0.009
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3399
Nucleic Acid Atoms
Solvent Atoms18
Heterogen Atoms34

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing