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Achiral, Cheap and Potent Inhibitors of Plasmepsins II
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 273 pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 273K
Crystal Properties Matthews coefficient Solvent content 2.77 55.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.476 α = 90 b = 154.743 β = 90 c = 39.257 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2005-05-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 51.57 97.5 0.087 0.095 14.9 5.9 44941 44941 266039 266039 40
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 96.3 0.4 0.48 3.2 3.9 6360
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 50.8 42660 2265 97.03 0.20218 0.20046 0.1984 0.2366 0.2345 RANDOM 34.029
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.64 -3.01 2.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.582 r_dihedral_angle_4_deg 16.209 r_dihedral_angle_3_deg 14.326 r_dihedral_angle_1_deg 6.268 r_mcangle_it 2.909 r_scangle_it 2.755 r_mcbond_it 2.017 r_scbond_it 1.934 r_angle_refined_deg 1.423 r_nbtor_refined 0.321
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.582 r_dihedral_angle_4_deg 16.209 r_dihedral_angle_3_deg 14.326 r_dihedral_angle_1_deg 6.268 r_mcangle_it 2.909 r_scangle_it 2.755 r_mcbond_it 2.017 r_scbond_it 1.934 r_angle_refined_deg 1.423 r_nbtor_refined 0.321 r_symmetry_vdw_refined 0.266 r_symmetry_hbond_refined 0.256 r_nbd_refined 0.209 r_xyhbond_nbd_refined 0.138 r_chiral_restr 0.104 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2607 Nucleic Acid Atoms Solvent Atoms 259 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement MAR345 data collection MOSFLM data reduction CCP4 data scaling MOLREP phasing