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Crystal Structure of mouse Rab27b bound to GDP in hexagonal space group
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 293 PEG 10000, Hepes, pH 7.5, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.66 53.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.061 α = 90 b = 66.061 β = 90 c = 379.988 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUAMTUM 4r 2005-11-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6A 0.9789 Photon Factory BL-6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.18 63.37 99.9 0.111 15.8 9142 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.18 3.31 100 100 0.693 15.7 1554
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3.18 36.5 8610 430 99.46 0.29152 0.28878 0.2991 0.3455 0.3595 RANDOM 43.356
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.84 1.42 2.84 -4.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.864 r_dihedral_angle_3_deg 19.267 r_dihedral_angle_4_deg 16.338 r_dihedral_angle_1_deg 6.86 r_angle_refined_deg 1.181 r_scangle_it 1.107 r_angle_other_deg 0.861 r_scbond_it 0.786 r_mcangle_it 0.666 r_mcbond_it 0.541
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.864 r_dihedral_angle_3_deg 19.267 r_dihedral_angle_4_deg 16.338 r_dihedral_angle_1_deg 6.86 r_angle_refined_deg 1.181 r_scangle_it 1.107 r_angle_other_deg 0.861 r_scbond_it 0.786 r_mcangle_it 0.666 r_mcbond_it 0.541 r_symmetry_vdw_refined 0.285 r_symmetry_vdw_other 0.283 r_nbd_refined 0.221 r_nbd_other 0.198 r_nbtor_refined 0.189 r_xyhbond_nbd_refined 0.154 r_nbtor_other 0.087 r_symmetry_hbond_refined 0.079 r_chiral_restr 0.07 r_mcbond_other 0.063 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2671 Nucleic Acid Atoms Solvent Atoms 11 Heterogen Atoms 56
Software Software Software Name Purpose SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction