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The Coiled-coil Domain (residues 1-75) Structure of the Sin Nombre Virus Nucleocapsid Protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 293 0.2 M ammonium acetate, 0.1 M sodium acetate, 30% polyethylene glycol (PEG) 4000, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.01 38.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 28.116 α = 90 b = 49.521 β = 90 c = 100.554 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Bent conical Si-mirror (Rh coating) 2005-10-30 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focusing mirrors in K-B geometry 2005-12-15 M MAD 3 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 0.9002 APS 14-BM-C 2 SYNCHROTRON APS BEAMLINE 23-ID-D 0.97964, 0.97948, 0.95373 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.15 10 99.9 0.051 0.051 27.4 5.8 50803 50773 2 2 9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.15 1.17 99.8 0.238 0.238 6.6 4.3 2516
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.15 10 50694 50689 2572 99.86 0.156 0.156 0.154 0.1532 0.177 0.1753 RANDOM 10.85
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.56 1.11 -1.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.279 r_dihedral_angle_4_deg 19.452 r_dihedral_angle_3_deg 13.409 r_sphericity_free 11.281 r_scangle_it 6.378 r_sphericity_bonded 5.689 r_scbond_it 4.655 r_dihedral_angle_1_deg 3.096 r_mcangle_it 2.892 r_mcbond_it 2.658
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.279 r_dihedral_angle_4_deg 19.452 r_dihedral_angle_3_deg 13.409 r_sphericity_free 11.281 r_scangle_it 6.378 r_sphericity_bonded 5.689 r_scbond_it 4.655 r_dihedral_angle_1_deg 3.096 r_mcangle_it 2.892 r_mcbond_it 2.658 r_rigid_bond_restr 2.347 r_angle_refined_deg 1.884 r_angle_other_deg 1.221 r_mcbond_other 0.973 r_symmetry_vdw_other 0.292 r_nbd_refined 0.265 r_symmetry_vdw_refined 0.254 r_chiral_restr 0.222 r_symmetry_hbond_refined 0.208 r_nbd_other 0.2 r_nbtor_refined 0.177 r_xyhbond_nbd_refined 0.172 r_nbtor_other 0.095 r_bond_refined_d 0.021 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1184 Nucleic Acid Atoms Solvent Atoms 245 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction