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The crystal structure of a putative transcriptional regulator RHA06195 from Rhodococcus sp. RHA1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 PEG3350 25%, 0.2 M LiSulphate, 0.1 M Bis-Tris, 20mM NH4Sulphate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.77 55.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.892 α = 90 b = 121.526 β = 90 c = 174.259 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-06-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97937 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 60 96.8 0.085 0.066 7.2 76498 74075 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.14 90.1 0.439 0.405 3.4 5.7 3345
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 36.74 76498 70206 3664 96.81 0.18758 0.18569 0.2006 0.22326 0.1922 RANDOM 40.14
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 -0.24 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.326 r_dihedral_angle_4_deg 16.804 r_dihedral_angle_3_deg 14.642 r_dihedral_angle_1_deg 9.123 r_scangle_it 4.378 r_scbond_it 2.957 r_mcangle_it 1.699 r_angle_refined_deg 1.656 r_mcbond_it 0.949 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.326 r_dihedral_angle_4_deg 16.804 r_dihedral_angle_3_deg 14.642 r_dihedral_angle_1_deg 9.123 r_scangle_it 4.378 r_scbond_it 2.957 r_mcangle_it 1.699 r_angle_refined_deg 1.656 r_mcbond_it 0.949 r_nbtor_refined 0.304 r_nbd_refined 0.217 r_symmetry_vdw_refined 0.197 r_symmetry_hbond_refined 0.184 r_xyhbond_nbd_refined 0.16 r_chiral_restr 0.118 r_bond_refined_d 0.02 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7320 Nucleic Acid Atoms Solvent Atoms 741 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building MLPHARE phasing DM phasing CCP4 phasing SOLVE phasing RESOLVE phasing ARP/wARP model building Coot model building O model building