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Crystal Structure of Protein of Unknown Function ATU1826, a Putative Alpha/Beta Hydrolase from Agrobacterium tumefaciens
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.4 291 0.1 M HEPES buffer, 0.4 M Magnesium chloride, 30% PEG 2000 MME, pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.03 39.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.549 α = 92.25 b = 50.579 β = 115.17 c = 54.844 γ = 99.82
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-10-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97930 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 35.5 75.6 0.086 20.8 3.6 53502 53502 25.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 15.3 0.364 2.17 1.8 719
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.5 35.5 53497 53497 2684 75.61 0.14 0.14 0.1382 0.1373 0.1742 0.1737 RANDOM 19.803
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.53 -0.07 0.07 0.3 0.2 0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.168 r_dihedral_angle_4_deg 15.646 r_dihedral_angle_3_deg 13.201 r_sphericity_free 6.21 r_dihedral_angle_1_deg 5.91 r_scangle_it 4.615 r_scbond_it 4.064 r_rigid_bond_restr 3.729 r_sphericity_bonded 3.719 r_mcangle_it 2.145
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.168 r_dihedral_angle_4_deg 15.646 r_dihedral_angle_3_deg 13.201 r_sphericity_free 6.21 r_dihedral_angle_1_deg 5.91 r_scangle_it 4.615 r_scbond_it 4.064 r_rigid_bond_restr 3.729 r_sphericity_bonded 3.719 r_mcangle_it 2.145 r_angle_refined_deg 1.56 r_mcbond_it 1.536 r_nbtor_refined 0.317 r_symmetry_hbond_refined 0.253 r_symmetry_vdw_refined 0.245 r_nbd_refined 0.211 r_xyhbond_nbd_refined 0.21 r_chiral_restr 0.109 r_metal_ion_refined 0.091 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3435 Nucleic Acid Atoms Solvent Atoms 513 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing SHELXD phasing MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing