☰ Navigation Tabs
Crystal Structure Analysis of the Nurse Shark New Antigen Receptor Ancestral variable domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 295 26% PEG 4000, 0.1M hepes, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 1.81 32.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.423 α = 90 b = 61.398 β = 90 c = 103.849 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-07-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.979454 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.92 50 99.8 0.09 33.7 6.9 15147 15147 -3 22.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.92 1.95 100 0.664 4.8 6.8 5075
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.92 50 14355 14355 730 99.77 0.21996 0.21692 0.2219 0.28052 0.2899 RANDOM 29.543
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.92 0.49 -1.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.044 r_dihedral_angle_4_deg 19.217 r_dihedral_angle_3_deg 14.917 r_dihedral_angle_1_deg 6.975 r_scangle_it 3.239 r_scbond_it 2.679 r_angle_refined_deg 1.778 r_mcangle_it 1.661 r_mcbond_it 1.299 r_angle_other_deg 0.945
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.044 r_dihedral_angle_4_deg 19.217 r_dihedral_angle_3_deg 14.917 r_dihedral_angle_1_deg 6.975 r_scangle_it 3.239 r_scbond_it 2.679 r_angle_refined_deg 1.778 r_mcangle_it 1.661 r_mcbond_it 1.299 r_angle_other_deg 0.945 r_symmetry_vdw_refined 0.332 r_mcbond_other 0.295 r_nbd_refined 0.245 r_symmetry_hbond_refined 0.245 r_symmetry_vdw_other 0.24 r_nbd_other 0.222 r_nbtor_refined 0.18 r_xyhbond_nbd_refined 0.177 r_chiral_restr 0.105 r_nbtor_other 0.09 r_bond_refined_d 0.022 r_bond_other_d 0.009 r_gen_planes_refined 0.007 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1649 Nucleic Acid Atoms Solvent Atoms 81 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement Blu-Ice data collection AMoRE phasing