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Mycobacterium tuberculosis thioredoxin C
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2TRX PDB ENTRY 2trx
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 10% iso-propanol, 0.1M Na HEPES, 20% PEG 4K, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.67 26.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 26.478 α = 88.37 b = 29.225 β = 88.15 c = 30.954 γ = 66.67
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 IMAGE PLATE RIGAKU RAXIS IV 2004-09-04 M SINGLE WAVELENGTH 2 1 x-ray 173 CCD ADSC QUANTUM 4 2004-10-15 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418 2 SYNCHROTRON ESRF BEAMLINE ID29 0.968 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.3 30 94.7 19858 19858
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.3 1.37 92.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2trx 1.3 18.9 19858 18487 1371 94.73 0.21391 0.21174 0.2066 0.24032 0.2411 RANDOM 10.392
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.824 r_dihedral_angle_3_deg 14.274 r_dihedral_angle_4_deg 11.64 r_dihedral_angle_1_deg 5.349 r_sphericity_free 3.092 r_scangle_it 3.022 r_sphericity_bonded 2.724 r_mcangle_it 2.115 r_scbond_it 1.974 r_angle_refined_deg 1.367
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.824 r_dihedral_angle_3_deg 14.274 r_dihedral_angle_4_deg 11.64 r_dihedral_angle_1_deg 5.349 r_sphericity_free 3.092 r_scangle_it 3.022 r_sphericity_bonded 2.724 r_mcangle_it 2.115 r_scbond_it 1.974 r_angle_refined_deg 1.367 r_mcbond_it 1.302 r_rigid_bond_restr 1.287 r_nbtor_refined 0.3 r_symmetry_vdw_refined 0.257 r_nbd_refined 0.237 r_symmetry_hbond_refined 0.203 r_xyhbond_nbd_refined 0.153 r_chiral_restr 0.111 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 862 Nucleic Acid Atoms Solvent Atoms 157 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement CrystalClear data collection MOSFLM data reduction CCP4 data scaling PHASER phasing