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Putative TetR transcriptional regulator from Rhodococcus sp. RHA1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 0.2 M Ammonium sulfate, 0.1 M Hepes buffer, 25% PEG 3350, 50 mM p-nitrophenol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.4 48.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.709 α = 90 b = 53.554 β = 90 c = 178.946 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-02-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97935 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 39.8 96.7 0.083 38.3 13.3 26965 26965 50.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.11 77.9 0.603 2.44 8 1761
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.05 39.8 26891 26891 2072 96.71 0.2058 0.2058 0.2024 0.2452 0.3011 RANDOM 39.086
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.84 0.28 -1.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.526 r_dihedral_angle_4_deg 18.042 r_dihedral_angle_3_deg 16.392 r_dihedral_angle_1_deg 5.794 r_scangle_it 3.914 r_scbond_it 2.804 r_angle_refined_deg 1.507 r_mcangle_it 1.471 r_mcbond_it 1.11 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.526 r_dihedral_angle_4_deg 18.042 r_dihedral_angle_3_deg 16.392 r_dihedral_angle_1_deg 5.794 r_scangle_it 3.914 r_scbond_it 2.804 r_angle_refined_deg 1.507 r_mcangle_it 1.471 r_mcbond_it 1.11 r_nbtor_refined 0.303 r_symmetry_vdw_refined 0.279 r_nbd_refined 0.23 r_symmetry_hbond_refined 0.219 r_xyhbond_nbd_refined 0.191 r_chiral_restr 0.099 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2746 Nucleic Acid Atoms Solvent Atoms 138 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing SHELXD phasing MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing