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Cholesterol Oxidase from Brevibacterium sterolicum- His121Ala Mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1I19 pdb entry 1I19
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.2 290 PEG 8K, MnSO4, NaCacodylate, pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 3.57 65.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 140.635 α = 90 b = 85.851 β = 112.48 c = 78.755 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 0.98 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 72.55 96.13 0.094 18.06 109450 109450
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 95.1 0.549 5.07 10776
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 1I19 1.6 72.55 109450 109450 5461 96.13 0.14888 0.14888 0.14793 0.1623 0.16724 0.1797 RANDOM 10.965
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.13 -0.04 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.914 r_scangle_it 2.389 r_scbond_it 1.456 r_angle_refined_deg 1.231 r_mcangle_it 0.994 r_angle_other_deg 0.828 r_mcbond_it 0.541 r_symmetry_vdw_other 0.301 r_nbd_other 0.241 r_nbd_refined 0.204
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.914 r_scangle_it 2.389 r_scbond_it 1.456 r_angle_refined_deg 1.231 r_mcangle_it 0.994 r_angle_other_deg 0.828 r_mcbond_it 0.541 r_symmetry_vdw_other 0.301 r_nbd_other 0.241 r_nbd_refined 0.204 r_symmetry_vdw_refined 0.183 r_xyhbond_nbd_refined 0.162 r_symmetry_hbond_refined 0.127 r_nbtor_other 0.079 r_chiral_restr 0.073 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4178 Nucleic Acid Atoms Solvent Atoms 698 Heterogen Atoms 83
Software Software Software Name Purpose REFMAC refinement ADSC data collection DENZO data reduction SCALEPACK data scaling CNS phasing