2I0E

Structure of catalytic domain of human protein kinase C beta II complexed with a bisindolylmaleimide inhibitor


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelOtherunpublished Akt-1 structure

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.52860.1 M ADA, 2.5 M sodium acetate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 286K
Crystal Properties
Matthews coefficientSolvent content
3.1460.83

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 93.098α = 90
b = 131.417β = 90
c = 83.801γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102004-09-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.11.0ALS5.0.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.65099.70.0490.04928.44.1323753237565
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.62.691000.4843

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTAkt-12.630323753165167099.90.236540.235420.28973RANDOM54.547
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.4-0.90.5
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.243
r_dihedral_angle_3_deg19.756
r_dihedral_angle_4_deg17.487
r_dihedral_angle_1_deg6.28
r_scangle_it1.747
r_angle_refined_deg1.329
r_scbond_it1.055
r_mcangle_it0.996
r_mcbond_it0.556
r_nbtor_refined0.314
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.243
r_dihedral_angle_3_deg19.756
r_dihedral_angle_4_deg17.487
r_dihedral_angle_1_deg6.28
r_scangle_it1.747
r_angle_refined_deg1.329
r_scbond_it1.055
r_mcangle_it0.996
r_mcbond_it0.556
r_nbtor_refined0.314
r_symmetry_vdw_refined0.275
r_nbd_refined0.214
r_symmetry_hbond_refined0.146
r_xyhbond_nbd_refined0.139
r_chiral_restr0.106
r_bond_refined_d0.01
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5112
Nucleic Acid Atoms
Solvent Atoms115
Heterogen Atoms66

Software

Software
Software NamePurpose
REFMACrefinement
ADSCdata collection
HKL-2000data reduction
HKL-2000data scaling
AMoREphasing