☰ Navigation Tabs
Structure ensembles of duplex DNA containing a 4'-oxidized abasic site.
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D NOESY 2.0 mM duplex DNA containing a 4'-oxidized abasic site, 10 mM sodium phosphate, 0.2 EDTA mM 90% H2O/10% D2O 10 mM sodium phosphate mM 6.5 1 atm 298 2 2D TOCSY 2.0 mM duplex DNA containing a 4'-oxidized abasic site, 10 mM sodium phosphate, 0.2 EDTA mM 90% H2O/10% D2O 10 mM sodium phosphate mM 6.5 1 atm 298 3 E-COSY 2.0 mM duplex DNA containing a 4'-oxidized abasic site, 10 mM sodium phosphate, 0.2 EDTA mM 90% H2O/10% D2O 10 mM sodium phosphate mM 6.5 1 atm 298 4 PE-COSY 2.0 mM duplex DNA containing a 4'-oxidized abasic site, 10 mM sodium phosphate, 0.2 EDTA mM 90% H2O/10% D2O 10 mM sodium phosphate mM 6.5 1 atm 298 5 GE-HSQC 2.0 mM duplex DNA containing a 4'-oxidized abasic site, 10 mM sodium phosphate, 0.2 EDTA mM 90% H2O/10% D2O 10 mM sodium phosphate mM 6.5 1 atm 298 6 PH-COSY 2.0 mM duplex DNA containing a 4'-oxidized abasic site, 10 mM sodium phosphate, 0.2 EDTA mM 90% H2O/10% D2O 10 mM sodium phosphate mM 6.5 1 atm 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Home-built Home-built 750 2 Home-built Home-built 591
NMR Refinement Method Details Software simulated annealing the structures are based on 410 NOE-derived
distance constraints and 43 dihedral angle restraints,8 distance restraints
from hydrogen bonds. Amber
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations,structures with the lowest energy Conformers Calculated Total Number 30 Conformers Submitted Total Number 10 Representative Model 1 (minimized average structure)
Computation: NMR Software # Classification Version Software Name Author 1 refinement Amber 8.0 D.A. Case et al 2 data analysis Felix 2001 3 data analysis MARDIGRAS