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Crystal structure of the pre-cleavage synaptic complex in the cre-loxp site-specific recombination
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CRX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 291 MPD, SODIUM ACETATE, CALCIUM CHLORIDE, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.95 58.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.625 α = 90 b = 122.13 β = 90 c = 178.748 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 MONOCHROMATOR 2003-03-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 1.078 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 99.1 0.06 0.05 13.7 46082 45638
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.4 2.44 98.8 0.397 0.332 2255
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1CRX 2.4 29.96 46082 45516 2309 98.77 0.24 0.24 0.209 0.2109 0.263 0.263 RANDOM 52.607
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.272 r_dihedral_angle_3_deg 18.219 r_dihedral_angle_4_deg 16.001 r_dihedral_angle_1_deg 6.498 r_scangle_it 2.413 r_angle_refined_deg 1.452 r_scbond_it 1.427 r_mcangle_it 1.028 r_mcbond_it 0.605 r_nbtor_refined 0.293
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.272 r_dihedral_angle_3_deg 18.219 r_dihedral_angle_4_deg 16.001 r_dihedral_angle_1_deg 6.498 r_scangle_it 2.413 r_angle_refined_deg 1.452 r_scbond_it 1.427 r_mcangle_it 1.028 r_mcbond_it 0.605 r_nbtor_refined 0.293 r_symmetry_vdw_refined 0.203 r_nbd_refined 0.184 r_xyhbond_nbd_refined 0.163 r_symmetry_hbond_refined 0.136 r_chiral_restr 0.071 r_bond_refined_d 0.008 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4963 Nucleic Acid Atoms 1394 Solvent Atoms 501 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction AMoRE phasing