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Structure of human FE65-WW domain in complex with hMena peptide.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.4 293 1.85M Ammonium Sulfate, 0.1M HEPES, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.86 33.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.661 α = 90 b = 41.661 β = 90 c = 38.633 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 4 DUAL SLITS 2006-06-18 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X12B 0.9792, 0.9793, 0.96 NSLS X12B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.33 50 98.6 0.057 23.5 6.5 9258 9129
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.33 1.38 90.3 0.438 5.4 815
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.33 17.03 9129 9085 431 99.41 0.174 0.174 0.172 0.214 0.2468 RANDOM 16.478
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 -0.04 -0.08 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.45 r_dihedral_angle_4_deg 14.444 r_dihedral_angle_3_deg 13.228 r_sphericity_free 11.263 r_sphericity_bonded 6.036 r_dihedral_angle_1_deg 5.754 r_scangle_it 3.877 r_scbond_it 3.514 r_mcangle_it 3.083 r_mcbond_it 2.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.45 r_dihedral_angle_4_deg 14.444 r_dihedral_angle_3_deg 13.228 r_sphericity_free 11.263 r_sphericity_bonded 6.036 r_dihedral_angle_1_deg 5.754 r_scangle_it 3.877 r_scbond_it 3.514 r_mcangle_it 3.083 r_mcbond_it 2.57 r_angle_refined_deg 1.958 r_rigid_bond_restr 1.784 r_angle_other_deg 1.093 r_mcbond_other 1.074 r_symmetry_vdw_other 0.252 r_nbd_refined 0.24 r_xyhbond_nbd_refined 0.235 r_nbd_other 0.202 r_nbtor_refined 0.201 r_symmetry_vdw_refined 0.198 r_symmetry_hbond_refined 0.155 r_chiral_restr 0.113 r_nbtor_other 0.096 r_bond_refined_d 0.021 r_gen_planes_refined 0.012 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 339 Nucleic Acid Atoms Solvent Atoms 34 Heterogen Atoms 6
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing