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Solution Structure of the C-terminal MA-3 domain of Pdcd4
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D NOESY 1mM unlabelled 13C Pdcd4 MA-3C; 100mM NaCl, 25mM NAH2PO4, 0.5mM DTT, 10uM EDTA, pH6.5 100% D20 150mM 6.5 ambient 298 2 2D TOCSY 1mM unlabelled 13C Pdcd4 MA-3C; 100mM NaCl, 25mM NAH2PO4, 0.5mM DTT, 10uM EDTA, pH6.5 100% D20 150mM 6.5 ambient 298 3 3D_13C-separated_NOESY 1mM U-13C (unlabelled aromatics) Pdcd4 MA-3C; 100mM NaCl, 25mM NAH2PO4, 0.5mM DTT, 10uM EDTA, pH6.5 100% D20 150mM 6.5 ambient 298 4 3D_15N-separated_NOESY 0.6mM U-15N Pdcd4 MA-3C; 100mM NaCl, 25mM NAH2PO4, 0.5mM DTT, 10uM EDTA, pH6.5 10% D20, 90% H20 150mM 6.5 ambient 298 5 3D HCCH-TOCSY 1mM U-13C (unlabelled aromatics) Pdcd4 MA-3C; 100mM NaCl, 25mM NAH2PO4, 0.5mM DTT, 10uM EDTA, pH6.5 100% D20 150mM 6.5 ambient 298 6 3D_15N TOCSY 0.6mM U-15N Pdcd4 MA-3C; 100mM NaCl, 25mM NAH2PO4, 0.5mM DTT, 10uM EDTA, pH6.5 10% D20, 90% H20 150mM 6.5 ambient 298 7 3D HNCACB 0.7mM U-15N, 13C Pdcd4 MA-3C; 100mM NaCl, 25mM NAH2PO4, 0.5mM DTT, 10uM EDTA, pH6.5 10% D20, 90% H20 150mM 6.5 ambient 298 8 3D CBCA(CO)NH 0.7mM U-15N, 13C Pdcd4 MA-3C; 100mM NaCl, 25mM NAH2PO4, 0.5mM DTT, 10uM EDTA, pH6.5 10% D20, 90% H20 150mM 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker DRX 600 3 Varian INOVA 800
NMR Refinement Method Details Software simulated annealing VNMR
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 49 Representative Model 33 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 collection VNMR 5.3 varian 2 collection TopSpin 1.2 bruker 3 processing NMRPipe 97.027.12.56 Delaglio 4 processing TopSpin 1.2 bruker 5 data analysis Sparky 3 T. D. Goddard and D. G. Kneller 6 structure solution CYANA 2.1 Guentert 7 refinement CYANA 2.1 Guentert