☰ Navigation Tabs
HL COLLAGENASE STRUCTURE AT 1.7A RESOLUTION
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HYL PDB ENTRY 1HYL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 vapor diffusion - hanging drop in microgravity 7 PROTEIN CONCENTRATION WAS 10MG/ML. IT WAS CRYSTALLIZED IN 1.4M AMMONIUM SULFATE BY HANGING DROP METHOD IN APCF REACTORS UNDER MICROGRAVITY (IML2 MISSION)., pH 7.0, vapor diffusion - hanging drop in microgravity
Crystal Properties Matthews coefficient Solvent content 2.54 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.3 α = 90 b = 111.3 β = 90 c = 165.68 γ = 90
Symmetry Space Group I 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 280 IMAGE PLATE MARRESEARCH 1995-11-18 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LURE BEAMLINE DW32 LURE DW32
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 15 96.3 0.047 11.4 4.4 54909 23.18
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.74 99.6 0.478 1.6 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION RIGID BODY THROUGHOUT PDB ENTRY 1HYL 1.7 8 54546 5345 96.3 0.195 0.195 0.1887 0.245 RANDOM 22.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 26.79 x_angle_deg 1.521 x_improper_angle_d 1.261 x_bond_d 0.009 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 26.79 x_angle_deg 1.521 x_improper_angle_d 1.261 x_bond_d 0.009 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot x_mcbond_it x_mcangle_it x_scbond_it x_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3552 Nucleic Acid Atoms Solvent Atoms 335 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction ROTAVATA data reduction X-PLOR model building X-PLOR refinement CCP4 data scaling X-PLOR phasing