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CRYSTAL STRUCTURE OF A PUTATIVE MEMBER OF THE DINB FAMILY (EXIG_1237) FROM EXIGUOBACTERIUM SIBIRICUM 255-15 AT 1.70 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 277 20.0% PEG-3350, 0.2M MgSO4,, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K 2 VAPOR DIFFUSION,SITTING DROP,NANODROP 293 20.0% PEG-3350, 0.2M MgSO4,, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.02 α = 90 b = 45.02 β = 90 c = 131.18 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2006-06-17 M SINGLE WAVELENGTH 2 2 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2006-06-17 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97925 SSRL BL9-2 2 SYNCHROTRON SSRL BEAMLINE BL9-2 0.92522, 0.97934 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.7 25.094 99.8 0.115 9.58 9.38 17704 37.034
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.7 1.76 99.8 0.97 1.99 7.01 1533
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 25.094 17699 1361 99.86 0.185 0.18514 0.181 0.1914 0.227 0.2778 RANDOM 33.948
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.63 -0.32 -0.63 0.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.465 r_dihedral_angle_4_deg 20.044 r_dihedral_angle_3_deg 14.219 r_scangle_it 7.64 r_scbond_it 5.706 r_dihedral_angle_1_deg 5.273 r_mcangle_it 3.507 r_mcbond_it 2.642 r_angle_refined_deg 1.451 r_angle_other_deg 1.025
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.465 r_dihedral_angle_4_deg 20.044 r_dihedral_angle_3_deg 14.219 r_scangle_it 7.64 r_scbond_it 5.706 r_dihedral_angle_1_deg 5.273 r_mcangle_it 3.507 r_mcbond_it 2.642 r_angle_refined_deg 1.451 r_angle_other_deg 1.025 r_mcbond_other 0.607 r_metal_ion_refined 0.401 r_symmetry_vdw_other 0.302 r_symmetry_vdw_refined 0.292 r_nbd_refined 0.223 r_nbtor_refined 0.191 r_nbd_other 0.179 r_xyhbond_nbd_refined 0.176 r_chiral_restr 0.1 r_symmetry_hbond_refined 0.092 r_nbtor_other 0.091 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1197 Nucleic Acid Atoms Solvent Atoms 65 Heterogen Atoms 4
Software Software Software Name Purpose MolProbity model building REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction SOLVE phasing