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Solution NMR structure of Phage-like element PBSX protein xkdW, Northeast Structural Genomics Consortium Target SR355
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 SIMULTANEOUS HETERONUCLEAR RESOLVED [1H,1H]-NOESY 0.02% NaN3, 100mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, pH 6.5, 95% H2O, 5% D2O 95% H2O/5% D2O n.a. 6.5 ambient 298 2 GFT (4,3)D HNNCABCA 0.02% NaN3, 100mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, pH 6.5, 95% H2O, 5% D2O 95% H2O/5% D2O n.a. 6.5 ambient 298 3 GFT (4,3)D CABCA(CO)NHN 0.02% NaN3, 100mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, pH 6.5, 95% H2O, 5% D2O 95% H2O/5% D2O n.a. 6.5 ambient 298 4 GFT (4,3)D HABCAB(CO)NHN 0.02% NaN3, 100mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, pH 6.5, 95% H2O, 5% D2O 95% H2O/5% D2O n.a. 6.5 ambient 298 5 GFT (4,3)D HCCH 0.02% NaN3, 100mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, pH 6.5, 95% H2O, 5% D2O 95% H2O/5% D2O n.a. 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 750 2 Varian INOVA 600
NMR Refinement Method Details Software simulated annealing
molecular dynamics
torsion angle dynamics VNMR
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 collection VNMR 6.1c Varian 2 processing NMRPipe 2.3 Delaglio, F 3 data analysis AutoAssign 1.15.1 Moseley, H. 4 data analysis AutoStructure 2.0 HUANG, Y.J. 5 structure solution CYANA 21 GUNTERT 6 refinement CNS 1.1 Brunger, A.T.