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Crystal structure of mouse putative dual specificity phosphatase complexed with zinc tungstate, New York Structural Genomics Consortium
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 290 100 MM MES, 0.2 M ZINC ACETATE, 10% PEG 8000, 10% GLYCEROL, pH 6.00, VAPOR DIFFUSION, SITTING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.03 39.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.207 α = 90 b = 53.207 β = 90 c = 174.485 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV MIRRORS 2006-05-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 100 0.048 0.044 10.2 6 10668
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 100 0.151 0.135 3.1 5.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 20 10284 314 99.9 0.15143 0.15012 0.1503 0.19642 0.1946 RANDOM 31.14
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.67 0.33 0.67 -1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.14 r_dihedral_angle_4_deg 14.601 r_dihedral_angle_3_deg 14.079 r_scangle_it 9.534 r_scbond_it 6.341 r_dihedral_angle_1_deg 5.136 r_mcangle_it 4.321 r_mcbond_it 2.781 r_angle_refined_deg 1.319 r_metal_ion_refined 0.424
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.14 r_dihedral_angle_4_deg 14.601 r_dihedral_angle_3_deg 14.079 r_scangle_it 9.534 r_scbond_it 6.341 r_dihedral_angle_1_deg 5.136 r_mcangle_it 4.321 r_mcbond_it 2.781 r_angle_refined_deg 1.319 r_metal_ion_refined 0.424 r_nbtor_refined 0.305 r_xyhbond_nbd_refined 0.206 r_symmetry_metal_ion_refined 0.203 r_symmetry_vdw_refined 0.198 r_nbd_refined 0.19 r_symmetry_hbond_refined 0.189 r_chiral_restr 0.097 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1193 Nucleic Acid Atoms Solvent Atoms 169 Heterogen Atoms 14
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHELX model building REFMAC refinement SHELX phasing